STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM34845.1Coagulation factor 5 8 type domain protein; Belongs to the glycosyl hydrolase 43 family. (307 aa)    
Predicted Functional Partners:
KRM35948.1
Hypothetical protein.
     0.845
KRM34846.1
Glucuronyl hydrolase.
 
     0.787
KRM34861.1
Hypothetical protein.
 
   
 0.738
KRM34843.1
Hypothetical protein.
       0.732
KRM34844.1
PTS system mannose fructose sorbose family IIDsubunit.
       0.732
KRM34858.1
Hypothetical protein.
    
 0.717
KRM34842.1
Hypothetical protein.
       0.716
KRM34851.1
Hypothetical protein.
 
 
  0.702
KRM34838.1
Hypothetical protein.
 
     0.692
KRM34407.1
Hypothetical protein.
  
  
 0.646
Your Current Organism:
Lactobacillus composti
NCBI taxonomy Id: 1423734
Other names: L. composti DSM 18527 = JCM 14202, Lactobacillus composti DSM 18527, Lactobacillus composti DSM 18527 = JCM 14202, Lactobacillus composti JCM 14202, Lactobacillus composti JCM 14202 = DSM 18527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.