STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM33908.1Alpha beta hydrolase superfamily protein. (303 aa)    
Predicted Functional Partners:
KRM33909.1
Endopeptidase PepO.
 
     0.779
KRM33910.1
Hypothetical protein.
       0.685
KRM33911.1
ATP-grasp protein.
       0.572
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
     0.479
KRM36540.1
Hypothetical protein; Belongs to the UPF0346 family.
  
     0.470
KRM32917.1
Hypothetical protein.
  
     0.464
KRM31432.1
Hypothetical protein.
  
     0.455
KRM35822.1
Hypothetical protein.
  
     0.430
KRM35096.1
Hypothetical protein.
  
     0.409
KRM31436.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Lactobacillus composti
NCBI taxonomy Id: 1423734
Other names: L. composti DSM 18527 = JCM 14202, Lactobacillus composti DSM 18527, Lactobacillus composti DSM 18527 = JCM 14202, Lactobacillus composti JCM 14202, Lactobacillus composti JCM 14202 = DSM 18527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.