STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM09074.1ABC-type polar amino acid transport system, ATPase component. (246 aa)    
Predicted Functional Partners:
KRM09071.1
ABC transporter, permease protein.
 0.998
KRM13928.1
Amino acid ABC transporter, permease protein.
 0.997
KRM09072.1
Hypothetical protein.
 0.997
KRM11153.1
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.
 0.989
KRM09073.1
Glutamine ABC superfamily ATP binding cassette transporter, substrate binding protein.
 0.980
KRM08532.1
Amino acid ABC transporter, permease protein.
 
 0.959
KRM08712.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
   
 
0.902
KRM07862.1
Hypothetical protein.
 
     
0.900
KRM12334.1
horA protein.
 
      0.899
KRM13660.1
ABC transporter ATP-binding protein permease.
 
     
0.898
Your Current Organism:
Lactobacillus concavus
NCBI taxonomy Id: 1423735
Other names: L. concavus DSM 17758, Lactobacillus concavus DSM 17758
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