STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RimIHypothetical protein. (183 aa)    
Predicted Functional Partners:
TsaB
Sialoglycoprotein metallo-endopeptidase.
  
 
 0.959
tsaD
Metalloendopeptidase, glycoprotease family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
  
 0.824
KRM79138.1
Hypothetical protein.
       0.589
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
   
 0.521
TsaE
ATP GTP hydrolase.
  
  
 0.520
rsmI
Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
   
   0.511
KRM79137.1
Oleoyl-[acyl-carrier protein] thioesterase.
       0.504
KRM79135.1
Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
       0.450
HolB
DNA polymerase III subunit delta.
  
   0.425
KRM79142.1
PTS system, Lactose Cellobiose specific IIB subunit.
       0.408
Your Current Organism:
Lactobacillus dextrinicus
NCBI taxonomy Id: 1423738
Other names: L. dextrinicus DSM 20335, Lactobacillus dextrinicus DSM 20335
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.