STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM12870.1Sugar diacid utilization regulator. (393 aa)    
Predicted Functional Partners:
KRM10324.1
Phage minor structural protein.
  
     0.629
KRM11512.1
Hypothetical protein.
  
     0.626
KRM10321.1
Phage tail tape measure protein, TP901 family.
  
     0.545
KRM01747.1
D-alanyl-D-alanine carboxypeptidase.
  
     0.494
KRM10326.1
Hypothetical protein.
  
     0.465
KRM08191.1
Major facilitator superfamily permease.
 
     0.423
KRM12869.1
Phosphopentomutase (phosphodeoxyribomutase); Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.401
Your Current Organism:
Lactobacillus farraginis
NCBI taxonomy Id: 1423743
Other names: L. farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis DSM 18382, Lactobacillus farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis JCM 14108, Lactobacillus farraginis JCM 14108 = DSM 18382
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.