STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM05841.1Hypothetical protein; GPH family glycoside-pentoside-hexuronide cation symporter. (440 aa)    
Predicted Functional Partners:
KRM05838.1
Arginine ABC transporter, permease protein ArtQ.
       0.492
KRM05839.1
Arginine ABC transporter, ATP-binding protein ArtM.
       0.492
KRM05840.1
N-carbamoylputrescine amidase.
       0.492
KRM05842.1
MazG nucleotide pyrophosphohydrolase.
       0.479
KRM05837.1
ABC transporter, substrate-binding protein, family 3.
       0.458
KRM12232.1
XRE family transcriptional regulator.
  
     0.438
KRM12881.1
Periplasmic secreted protein.
 
     0.423
KRM09000.1
Hypothetical protein.
  
     0.419
KRM05843.1
Hypothetical protein.
       0.418
Your Current Organism:
Lactobacillus farraginis
NCBI taxonomy Id: 1423743
Other names: L. farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis DSM 18382, Lactobacillus farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis JCM 14108, Lactobacillus farraginis JCM 14108 = DSM 18382
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