STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM10964.1N-acetylmuramoyl-L-alanine amidase. (223 aa)    
Predicted Functional Partners:
KRM11612.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.748
KRM12866.1
Hypothetical protein.
  
  
  0.683
KRM03950.1
Metal-dependent membrane protease.
  
     0.670
KRM09160.1
Hypothetical protein.
  
     0.668
KRM12865.1
Periplasmic protease.
 
    0.642
KRM06644.1
Hypothetical protein.
  
     0.592
KRM08586.1
Surface layer protein SlpB.
  
     0.576
KRM08386.1
Hypothetical protein.
  
     0.573
KRM01442.1
Hypothetical protein.
  
     0.573
KRM06908.1
Hypothetical protein.
  
     0.569
Your Current Organism:
Lactobacillus farraginis
NCBI taxonomy Id: 1423743
Other names: L. farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis DSM 18382, Lactobacillus farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis JCM 14108, Lactobacillus farraginis JCM 14108 = DSM 18382
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.