STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM10031.1Competence protein ComGA. (323 aa)    
Predicted Functional Partners:
KRM10030.1
Type II secretory pathway competence component.
 
 0.999
KRM10028.1
Hypothetical protein.
  
 0.996
KRM10029.1
Competence protein GC.
  
  
 0.976
KRM10551.1
Type 4 prepilin family protein specific leader peptidase.
 
 
 0.891
KRM11349.1
ATP-dependent DNA helicase translocase.
   
  
 0.853
KRM01064.1
Competence protein EC.
 
  
 0.826
KRM10027.1
Hypothetical protein.
       0.773
KRM09215.1
LysM domain protein.
    
   0.741
KRM01062.1
Competence protein ComEA.
  
  
 0.722
KRM07500.1
DNA protecting protein DprA.
 
  
 0.710
Your Current Organism:
Lactobacillus farraginis
NCBI taxonomy Id: 1423743
Other names: L. farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis DSM 18382, Lactobacillus farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis JCM 14108, Lactobacillus farraginis JCM 14108 = DSM 18382
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.