STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM09170.1Glycerophosphodiester phosphodiesterase. (231 aa)    
Predicted Functional Partners:
KRM09171.1
Hypothetical protein.
       0.477
KRM09175.1
Glycerol-3-phosphate binding protein.
 
  
 0.470
KRM09169.1
Short-chain dehydrogenase reductase SDR.
       0.465
KRM11454.1
MIP family major intrinsic protein channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.436
KRM10065.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.432
KRM09168.1
Sugar fermentation stimulation protein; Belongs to the SfsA family.
       0.427
KRM09174.1
Sugar ABC superfamily ATP binding cassette transporter, membrane protein.
  
  
 0.411
Your Current Organism:
Lactobacillus farraginis
NCBI taxonomy Id: 1423743
Other names: L. farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis DSM 18382, Lactobacillus farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis JCM 14108, Lactobacillus farraginis JCM 14108 = DSM 18382
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