STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM04258.1Signal transduction histidine kinase. (339 aa)    
Predicted Functional Partners:
KRM04259.1
OmpR family DNA-binding response regulator.
 
  0.967
KRM08460.1
DNA-binding response regulator.
  
  0.854
KRM01109.1
Response regulator receiver domain protein.
  
  0.832
KRM04257.1
Metal ion ABC transporter ATPase.
 
     0.819
KRM01421.1
Response regulator.
  
  0.814
KRM11586.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.804
KRM04274.1
Response regulator.
  
  0.799
KRM10762.1
Response regulator.
 
  0.798
KRM04317.1
Response regulator.
  
  0.770
KRM09408.1
Two-component system response regulator.
  
  0.767
Your Current Organism:
Lactobacillus farraginis
NCBI taxonomy Id: 1423743
Other names: L. farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis DSM 18382, Lactobacillus farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis JCM 14108, Lactobacillus farraginis JCM 14108 = DSM 18382
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.