STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM04259.1OmpR family DNA-binding response regulator. (226 aa)    
Predicted Functional Partners:
KRM04258.1
Signal transduction histidine kinase.
 
  0.967
KRM01110.1
Signal transduction histidine kinase.
 
 0.933
KRM08461.1
Two-component sensor histidine kinase.
  0.911
KRM10763.1
Signal transduction histidine kinase.
 0.899
KRM10838.1
Histidine kinase.
 0.897
KRM09409.1
Hypothetical protein.
  0.894
KRM00989.1
Histidine kinase.
 0.855
KRM09825.1
Response regulator.
  
  
  0.844
KRM01420.1
Sensor histidine kinase.
  0.843
KRM04318.1
Histidine kinase.
 0.828
Your Current Organism:
Lactobacillus farraginis
NCBI taxonomy Id: 1423743
Other names: L. farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis DSM 18382, Lactobacillus farraginis DSM 18382 = JCM 14108, Lactobacillus farraginis JCM 14108, Lactobacillus farraginis JCM 14108 = DSM 18382
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.