STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN04504.1Hypothetical protein. (684 aa)    
Predicted Functional Partners:
KRN04503.1
Hypothetical protein.
 
 0.989
KRN04604.1
ABC transporter ATPase component.
 
 0.939
KRN04092.1
ABC transporter, ATP-binding permease protein.
  
 0.881
KRN04501.1
His Kinase A domain protein.
 
 
 
 0.877
KRN04502.1
Two-component response regulator.
 
     0.831
KRN04505.1
Beta-lactamase domain-containing protein.
       0.722
KRN04605.1
Abc-type antimicrobial peptide transport system, permease component.
 
    0.617
KRN04606.1
Hypothetical protein.
  
     0.545
KRN04571.1
Hypothetical protein.
  
     0.468
KRN04307.1
Hypothetical protein.
  
    0.459
Your Current Organism:
Lactobacillus floricola
NCBI taxonomy Id: 1423744
Other names: L. floricola DSM 23037 = JCM 16512, Lactobacillus floricola DSM 23037, Lactobacillus floricola DSM 23037 = JCM 16512, Lactobacillus floricola JCM 16512, Lactobacillus floricola JCM 16512 = DSM 23037, Lactobacillus floricola Ryu1-2, Lactobacillus sp. Ryu1-2
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