STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN03874.1Hypothetical protein. (70 aa)    
Predicted Functional Partners:
KRN03875.1
Membrane-associated serine protease.
 
     0.870
KRN03873.1
Glucokinase.
  
    0.862
KRN03872.1
Rhodanese-sulfurtransferase.
 
     0.853
KRN03876.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.835
KRN03685.1
Hypothetical protein; Belongs to the UPF0346 family.
  
     0.690
KRN03611.1
Hypothetical protein; Belongs to the UPF0356 family.
  
    0.652
KRN03659.1
O-linked transferase.
 
     0.638
KRN03877.1
Cell division protein FtsI penicillin-binding protein 2.
       0.595
KRN03573.1
Hypothetical protein.
 
    0.545
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
    0.540
Your Current Organism:
Lactobacillus floricola
NCBI taxonomy Id: 1423744
Other names: L. floricola DSM 23037 = JCM 16512, Lactobacillus floricola DSM 23037, Lactobacillus floricola DSM 23037 = JCM 16512, Lactobacillus floricola JCM 16512, Lactobacillus floricola JCM 16512 = DSM 23037, Lactobacillus floricola Ryu1-2, Lactobacillus sp. Ryu1-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.