STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311215_01113Unannotated protein. (87 aa)    
Predicted Functional Partners:
dapB
Unannotated protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.995
GCA_001311215_01604
Unannotated protein.
 
 
 0.951
dapF
Unannotated protein; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
  
 0.923
GCA_001311215_01107
Unannotated protein.
 
  
 0.914
FC87_GL000363
Unannotated protein; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
 
  
 0.910
lysA
Unannotated protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.907
GCA_001311215_01115
Unannotated protein.
 
  
 0.907
FC87_GL001179
Unannotated protein.
    
 0.903
dapH
Unannotated protein; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
 
     0.896
GCA_001311215_00811
Unannotated protein.
  
 
 0.894
Your Current Organism:
Lactobacillus florum
NCBI taxonomy Id: 1423745
Other names: L. florum DSM 22689 = JCM 16035, Lactobacillus florum DSM 22689, Lactobacillus florum DSM 22689 = JCM 16035, Lactobacillus florum F9-1, Lactobacillus florum JCM 16035, Lactobacillus florum JCM 16035 = DSM 22689, Lactobacillus florum NRIC 0771, Lactobacillus sp. F9-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.