KRL28022.1 protein (Lactobacillus frumenti) - STRING interaction network

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Predicted Interactions

gene neighborhood

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protein homology

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Score

KRL28022.1

ABC superfamily ATP binding cassette transporter, ABC protein. (495 aa)

Predicted Functional Partners:

rplU

0.789

rplD

0.775

rpsC

0.774

rpsO

0.774

rplR

0.773

rplM

0.773

rplC

0.771

rpmD

0.770

rpmF

0.770

rplW

0.769

Your Current Organism:

Lactobacillus frumenti

NCBI taxonomy Id: 1423746
Other names: L. frumenti DSM 13145, Lactobacillus frumenti DSM 13145

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRL28022.1	rplC	FD27_GL000296	FD27_GL000359	ABC superfamily ATP binding cassette transporter, ABC protein.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.771
KRL28022.1	rplD	FD27_GL000296	FD27_GL000360	ABC superfamily ATP binding cassette transporter, ABC protein.	Ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.775
KRL28022.1	rplM	FD27_GL000296	FD27_GL000390	ABC superfamily ATP binding cassette transporter, ABC protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.773
KRL28022.1	rplR	FD27_GL000296	FD27_GL000374	ABC superfamily ATP binding cassette transporter, ABC protein.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.773
KRL28022.1	rplU	FD27_GL000296	FD27_GL001117	ABC superfamily ATP binding cassette transporter, ABC protein.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.789
KRL28022.1	rplW	FD27_GL000296	FD27_GL000361	ABC superfamily ATP binding cassette transporter, ABC protein.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.769
KRL28022.1	rpmD	FD27_GL000296	FD27_GL000376	ABC superfamily ATP binding cassette transporter, ABC protein.	Hypothetical protein.	0.770
KRL28022.1	rpmF	FD27_GL000296	FD27_GL001154	ABC superfamily ATP binding cassette transporter, ABC protein.	Hypothetical protein; Belongs to the bacterial ribosomal protein bL32 family.	0.770
KRL28022.1	rpsC	FD27_GL000296	FD27_GL000365	ABC superfamily ATP binding cassette transporter, ABC protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.774
KRL28022.1	rpsO	FD27_GL000296	FD27_GL000706	ABC superfamily ATP binding cassette transporter, ABC protein.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.774
rplC	KRL28022.1	FD27_GL000359	FD27_GL000296	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC superfamily ATP binding cassette transporter, ABC protein.	0.771
rplC	rplD	FD27_GL000359	FD27_GL000360	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	FD27_GL000359	FD27_GL000390	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	FD27_GL000359	FD27_GL000374	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	FD27_GL000359	FD27_GL001117	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rplW	FD27_GL000359	FD27_GL000361	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpmD	FD27_GL000359	FD27_GL000376	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Hypothetical protein.	0.999
rplC	rpmF	FD27_GL000359	FD27_GL001154	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Hypothetical protein; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rplC	rpsC	FD27_GL000359	FD27_GL000365	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	FD27_GL000359	FD27_GL000706	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999