STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL27909.1Membrane protein. (255 aa)    
Predicted Functional Partners:
KRL27457.1
Hypothetical protein.
  
     0.748
KRL27702.1
Hypothetical protein.
  
     0.725
KRL27465.1
Polysaccharide biosynthesis protein.
  
     0.679
KRL25873.1
Hypothetical protein.
  
     0.679
KRL26962.1
TPR repeat-containing protein.
  
     0.644
ychF
GTP-binding translation factor YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.637
KRL27720.1
Hypothetical protein.
  
     0.617
KRL27907.1
Hypothetical protein.
       0.611
KRL28744.1
Sortase.
  
     0.611
KRL27905.1
Chromosome partitioning protein, membrane-associated ATPase.
       0.598
Your Current Organism:
Lactobacillus frumenti
NCBI taxonomy Id: 1423746
Other names: L. frumenti DSM 13145, Lactobacillus frumenti DSM 13145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.