STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL19728.1Abc superfamily atp binding cassette transporter, binding protein; Belongs to the bacterial solute-binding protein 9 family. (305 aa)    
Predicted Functional Partners:
KRL19726.1
Metal cation ABC transporter membrane protein.
 
  
 0.964
KRL19727.1
Abc-type mn2 zn2 transport system, atpase component.
  
 0.962
rpsZ
Hypothetical protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.491
rpmB
Hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.483
KRL19729.1
Transcriptional regulator.
     
 0.439
Your Current Organism:
Lactobacillus gallinarum
NCBI taxonomy Id: 1423748
Other names: L. gallinarum DSM 10532 = JCM 2011, Lactobacillus gallinarum DSM 10532, Lactobacillus gallinarum DSM 10532 = JCM 2011, Lactobacillus gallinarum JCM 2011, Lactobacillus gallinarum JCM 2011 = DSM 10532
Server load: low (22%) [HD]