STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL23241.1Phosphoesterase. (406 aa)    
Predicted Functional Partners:
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.999
KRL23242.1
Hypothetical protein.
 
 
 0.966
KRL25144.1
Atp-dependent dna helicase recq.
 
 0.944
dinG
ATP-dependent DNA helicase DinG; 3'-5' exonuclease.
  
 0.866
KRL21155.1
3-oxoacyl-(acyl-carrier protein) reductase.
  
 
 0.846
KRL23240.1
Hypothetical protein; Belongs to the UPF0342 family.
 
     0.842
KRL23243.1
CMP-binding factor.
     
 0.835
recA
Recombinase a; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.798
KRL23239.1
Membrane carboxypeptidase (penicillin-binding protein).
       0.785
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 0.701
Your Current Organism:
Lactobacillus gallinarum
NCBI taxonomy Id: 1423748
Other names: L. gallinarum DSM 10532 = JCM 2011, Lactobacillus gallinarum DSM 10532, Lactobacillus gallinarum DSM 10532 = JCM 2011, Lactobacillus gallinarum JCM 2011, Lactobacillus gallinarum JCM 2011 = DSM 10532
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