STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM07051.1Rhamnogalacturonate lyase. (564 aa)    
Predicted Functional Partners:
KRM07050.1
Oligogalacturonide transporter.
 
     0.850
KRM07049.1
Hypothetical protein.
 
     0.838
KRM07052.1
Rhamnogalacturonate lyase.
 
    
0.793
KRM07053.1
Hypothetical protein.
       0.610
KRM06275.1
Hypothetical protein.
  
     0.567
KRM06278.1
Hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
  
     0.501
KRM04010.1
Histidinol phosphate phosphatase HisJ family protein.
  
     0.465
KRM06076.1
Alfa-l-rhamnosidase.
  
     0.437
KRM06071.1
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
  
     0.430
KRM04033.1
S15 family peptidase.
  
     0.428
Your Current Organism:
Lactobacillus ghanensis
NCBI taxonomy Id: 1423750
Other names: L. ghanensis DSM 18630, Lactobacillus ghanensis DSM 18630
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.