STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM06386.1ABC transporter ATP-binding protein. (232 aa)    
Predicted Functional Partners:
KRM07969.1
Hypothetical protein.
 0.992
KRM06385.1
Efflux ABC transporter permease.
 
 
 0.965
KRM07573.1
ABC transporter, ATP-binding protein.
 
  
0.930
KRM04605.1
Fe(3+)-transporting ATPase.
 
    
0.908
KRM06165.1
ABC-type uncharacterized transport system, ATPase component.
 
    
0.907
KRM06207.1
Peptide ABC transporter, ATP-binding protein.
 
    
0.902
KRM04584.1
ABC transporter related protein.
 
0.879
KRM07056.1
Efflux ABC transporter, permease protein.
  
 0.873
KRM07117.1
Transporter subunit membrane component of ABC superfamily.
 
 
 
  0.821
KRM05793.1
Peptide ABC transporter permease.
  
 0.795
Your Current Organism:
Lactobacillus ghanensis
NCBI taxonomy Id: 1423750
Other names: L. ghanensis DSM 18630, Lactobacillus ghanensis DSM 18630
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