STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM05996.1Hypothetical protein. (377 aa)    
Predicted Functional Partners:
KRM05995.1
Hypothetical protein.
 
 
  0.863
KRM05993.1
Udp-glucose 4-epimerase.
 
 
 0.811
KRM06003.1
Hypothetical protein.
  
 
  0.775
KRM05992.1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
  
 0.773
KRM04599.1
Hypothetical protein.
  
     0.769
KRM05994.1
araD protein.
       0.736
KRM05991.1
Hypothetical protein.
  
  
 0.713
KRM06374.1
Damage inducible family protein.
  
     0.517
KRM04595.1
Hypothetical protein.
  
     0.491
KRM05990.1
Glycosyl transferase family 2.
       0.468
Your Current Organism:
Lactobacillus ghanensis
NCBI taxonomy Id: 1423750
Other names: L. ghanensis DSM 18630, Lactobacillus ghanensis DSM 18630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.