STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM05550.1Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily. (348 aa)    
Predicted Functional Partners:
KRM05551.1
Peptide nickel transport system permease protein.
 
 0.999
KRM06205.1
Binding-protein-dependent transport systems inner membrane component.
 
 0.997
KRM05552.1
Oligopeptide transport system permease protein.
 
 0.997
KRM04528.1
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 0.987
KRM06204.1
Dipeptide transport system permease protein DppB.
 
 0.981
KRM05549.1
Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.975
KRM04529.1
Oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein.
 
 0.955
KRM06222.1
Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.
 
 0.930
KRM05553.1
Oligopeptide-binding protein.
 
 0.927
KRM04530.1
Hypothetical protein; Belongs to the ABC transporter superfamily.
 
 
0.899
Your Current Organism:
Lactobacillus ghanensis
NCBI taxonomy Id: 1423750
Other names: L. ghanensis DSM 18630, Lactobacillus ghanensis DSM 18630
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.