STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM04034.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
KRM04033.1
S15 family peptidase.
     0.994
KRM04032.1
Hypothetical protein.
       0.773
KRM04035.1
Phosphate acetyltransferase.
       0.746
buk
Butyrate kinase; Belongs to the acetokinase family.
       0.746
KRM06275.1
Hypothetical protein.
  
     0.590
KRM06076.1
Alfa-l-rhamnosidase.
  
     0.547
KRM06157.1
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.508
KRM06074.1
Hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.494
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.450
KRM04038.1
Exonuclease SbcC.
       0.450
Your Current Organism:
Lactobacillus ghanensis
NCBI taxonomy Id: 1423750
Other names: L. ghanensis DSM 18630, Lactobacillus ghanensis DSM 18630
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.