STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN08680.1Hypothetical protein. (371 aa)    
Predicted Functional Partners:
KRN14864.1
3-oxoacyl-[acyl-carrier-protein] reductase.
   
 
 0.777
KRN11932.1
2-deoxy-D-gluconate 3-dehydrogenase.
   
 
 0.777
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.741
rpoZ
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.732
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.690
dinG
ATP-dependent DNA helicase; 3'-5' exonuclease.
    
   0.676
KRN11731.1
Family 20 glycoside hydrolase.
  
 0.642
KRN12505.1
Hypothetical protein.
    
   0.621
KRN10131.1
Prophage LambdaSa03, helicase.
    
   0.621
KRN09620.1
Phage DEAD box family helicase.
    
   0.621
Your Current Organism:
Lactobacillus gigeriorum
NCBI taxonomy Id: 1423751
Other names: L. gigeriorum DSM 23908 = CRBIP 24.85, Lactobacillus gigeriorum 202, Lactobacillus gigeriorum CRBIP 24.85, Lactobacillus gigeriorum CRBIP 24.85 = DSM 23908, Lactobacillus gigeriorum DSM 23908, Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.