STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM20653.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
KRM20652.1
rRNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.826
KRM24254.1
Hypothetical protein.
  
     0.772
KRM21053.1
Membrane protein.
  
     0.758
KRM24433.1
Glycerophosphoryl diester phosphodiesterase family protein.
  
     0.747
KRM22428.1
vanZ like family protein.
  
     0.728
KRM24132.1
Hypothetical protein.
  
     0.639
KRM24022.1
Membrane protein.
  
     0.635
KRM22390.1
CAAX amino terminal protease family protein.
  
     0.618
KRM22408.1
Hypothetical protein.
  
    0.606
KRM24436.1
Calcineurin-like phosphoesterase family protein; Belongs to the 5'-nucleotidase family.
  
     0.579
Your Current Organism:
Lactobacillus graminis
NCBI taxonomy Id: 1423752
Other names: L. graminis DSM 20719, Lactobacillus graminis DSM 20719
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