STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM40197.1Hypothetical protein. (270 aa)    
Predicted Functional Partners:
KRM39805.1
Cof family protein.
 
 
  0.841
KRM36975.1
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
   
 0.703
KRM37925.1
HAD superfamily hydrolase.
 
 
 
0.701
KRM40202.1
HAD-superfamily hydrolase.
  
 
 
0.700
KRM40229.1
PTS family mannose porter, IIAB component.
    
  0.599
KRM40196.1
Hypothetical protein.
       0.526
KRM40253.1
HAD superfamily hydrolase.
 
 
 
0.509
KRM40216.1
HAD superfamily hydrolase.
 
 
 
0.502
KRM37485.1
HAD family hydrolase.
 
 
 
0.491
KRM40248.1
Hypothetical protein.
 
 
 
0.478
Your Current Organism:
Lactobacillus hamsteri
NCBI taxonomy Id: 1423754
Other names: L. hamsteri DSM 5661 = JCM 6256, Lactobacillus hamsteri DSM 5661, Lactobacillus hamsteri DSM 5661 = JCM 6256, Lactobacillus hamsteri JCM 6256, Lactobacillus hamsteri JCM 6256 = DSM 5661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.