STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM40070.1ABC superfamily ATP binding cassette transporter, membrane protein. (353 aa)    
Predicted Functional Partners:
KRM40071.1
Resistance ABC superfamily ATP binding cassette transporter, binding protein.
 
 0.996
KRM40069.1
Transcriptional regulator.
 
     0.955
KRM38857.1
ABC superfamily ATP binding cassette transporter.
  
 0.880
KRM38051.1
Cell division ATP-binding protein FtsE.
  
 0.880
KRM40837.1
ABC-type antimicrobial peptide transport system, atpase component.
  
 0.827
KRM40126.1
Hypothetical protein.
  
 0.827
KRM40068.1
Phosphoglycerate mutase.
       0.513
KRM40067.1
Alpha beta fold family hydrolase.
  
    0.401
KRM37959.1
Two-component sensor histidine kinase.
 
 
 0.401
Your Current Organism:
Lactobacillus hamsteri
NCBI taxonomy Id: 1423754
Other names: L. hamsteri DSM 5661 = JCM 6256, Lactobacillus hamsteri DSM 5661, Lactobacillus hamsteri DSM 5661 = JCM 6256, Lactobacillus hamsteri JCM 6256, Lactobacillus hamsteri JCM 6256 = DSM 5661
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