STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM41294.1Integral membrane protein. (200 aa)    
Predicted Functional Partners:
KRM40969.1
ABC transporter permease.
   
 
 0.999
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
 0.999
ecfA-2
Cobalt ABC superfamily ATP binding cassette transporter, ABC protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
 
 0.999
KRM40518.1
Cobalt transporter.
   
 
 0.824
KRM40654.1
ABC superfamily ATP binding cassette transporter, permease protein.
   
 
 0.809
KRM41293.1
Hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
       0.664
KRM40920.1
Hypothetical protein.
 
   
 0.662
KRM41295.1
Glycosyltransferase.
       0.613
KRM40086.1
Hypothetical protein.
  
     0.476
KRM40436.1
UPF0473 protein yrzB; Belongs to the UPF0473 family.
  
     0.474
Your Current Organism:
Lactobacillus hamsteri
NCBI taxonomy Id: 1423754
Other names: L. hamsteri DSM 5661 = JCM 6256, Lactobacillus hamsteri DSM 5661, Lactobacillus hamsteri DSM 5661 = JCM 6256, Lactobacillus hamsteri JCM 6256, Lactobacillus hamsteri JCM 6256 = DSM 5661
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.