STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM19832.1Cell surface hydrolase. (279 aa)    
Predicted Functional Partners:
KRM19833.1
Hypothetical protein.
 
     0.727
KRM19834.1
Hypothetical protein.
 
     0.647
KRM20215.1
Hypothetical protein.
  
     0.613
KRM19000.1
Inorganic pyrophosphatase.
      0.596
cshA
DEAD-box ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
   
  
 0.442
KRM19332.1
Hypothetical protein.
  
     0.423
KRM20386.1
Hypothetical protein.
  
     0.415
KRM19585.1
Gtp diphosphokinase.
      
 0.414
KRM19586.1
DNA-binding response regulator.
      
 0.412
KRM20362.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Lactobacillus hayakitensis
NCBI taxonomy Id: 1423755
Other names: L. hayakitensis DSM 18933 = JCM 14209, Lactobacillus hayakitensis DSM 18933, Lactobacillus hayakitensis DSM 18933 = JCM 14209, Lactobacillus hayakitensis JCM 14209, Lactobacillus hayakitensis JCM 14209 = DSM 18933
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.