STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM86259.1Superfamily II DNA RNA helicase. (413 aa)    
Predicted Functional Partners:
KRM86258.1
Amidophosphoribosyltransferase.
 
  
 0.855
KRM86109.1
Competence protein ComEA.
   
  
 0.785
KRM86209.1
Competence protein ComGA.
   
  
 0.758
KRM86108.1
Metallo-beta-lactamase superfamily hydrolase.
   
  
 0.682
KRM86206.1
Hypothetical protein.
   
  
 0.680
KRM86260.1
Xaa-pro dipeptidase.
     
 0.672
KRM85059.1
DNA replication protein DnaD.
  
     0.654
KRM86208.1
Type II secretory pathway competence component.
   
  
 0.629
KRM85884.1
Rossmann fold nucleotide-binding protein for DNA uptake.
  
  
 0.586
KRM86207.1
Hypothetical protein.
  
  
 0.579
Your Current Organism:
Lactobacillus hominis
NCBI taxonomy Id: 1423758
Other names: L. hominis DSM 23910 = CRBIP 24.179, Lactobacillus hominis 61D, Lactobacillus hominis CRBIP 24.179, Lactobacillus hominis CRBIP 24.179 = DSM 23910, Lactobacillus hominis DSM 23910, Lactobacillus hominis DSM 23910 = CRBIP 24.179, Lactobacillus sp. 61D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.