KRL06267.1 protein (Lactobacillus hordei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRL06267.1

Iron ABC transporter substrate-binding protein. (276 aa)

Predicted Functional Partners:

KRL06266.1

0.996

KRL06265.1

0.995

KRL06268.1

0.936

KRL06269.1

0.552

KRL07944.1

0.510

KRL07928.1

0.488

KRL07522.1

0.421

Your Current Organism:

Lactobacillus hordei

NCBI taxonomy Id: 1423759
Other names: L. hordei DSM 19519, Lactobacillus hordei DSM 19519

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRL06265.1	KRL06266.1	FC92_GL000945	FC92_GL000946	Iron-siderophore uptake ABC system ATP-binding component.	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.999
KRL06265.1	KRL06267.1	FC92_GL000945	FC92_GL000947	Iron-siderophore uptake ABC system ATP-binding component.	Iron ABC transporter substrate-binding protein.	0.995
KRL06265.1	KRL06268.1	FC92_GL000945	FC92_GL000948	Iron-siderophore uptake ABC system ATP-binding component.	Cell surface protein.	0.869
KRL06265.1	KRL06269.1	FC92_GL000945	FC92_GL000949	Iron-siderophore uptake ABC system ATP-binding component.	Hypothetical protein.	0.552
KRL06265.1	KRL07928.1	FC92_GL000945	FC92_GL000995	Iron-siderophore uptake ABC system ATP-binding component.	Hypothetical protein.	0.608
KRL06266.1	KRL06265.1	FC92_GL000946	FC92_GL000945	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron-siderophore uptake ABC system ATP-binding component.	0.999
KRL06266.1	KRL06267.1	FC92_GL000946	FC92_GL000947	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter substrate-binding protein.	0.996
KRL06266.1	KRL06268.1	FC92_GL000946	FC92_GL000948	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Cell surface protein.	0.922
KRL06266.1	KRL06269.1	FC92_GL000946	FC92_GL000949	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Hypothetical protein.	0.551
KRL06266.1	KRL07522.1	FC92_GL000946	FC92_GL001912	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Transcription regulator.	0.413
KRL06266.1	KRL07928.1	FC92_GL000946	FC92_GL000995	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Hypothetical protein.	0.685
KRL06267.1	KRL06265.1	FC92_GL000947	FC92_GL000945	Iron ABC transporter substrate-binding protein.	Iron-siderophore uptake ABC system ATP-binding component.	0.995
KRL06267.1	KRL06266.1	FC92_GL000947	FC92_GL000946	Iron ABC transporter substrate-binding protein.	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.996
KRL06267.1	KRL06268.1	FC92_GL000947	FC92_GL000948	Iron ABC transporter substrate-binding protein.	Cell surface protein.	0.936
KRL06267.1	KRL06269.1	FC92_GL000947	FC92_GL000949	Iron ABC transporter substrate-binding protein.	Hypothetical protein.	0.552
KRL06267.1	KRL07522.1	FC92_GL000947	FC92_GL001912	Iron ABC transporter substrate-binding protein.	Transcription regulator.	0.421
KRL06267.1	KRL07928.1	FC92_GL000947	FC92_GL000995	Iron ABC transporter substrate-binding protein.	Hypothetical protein.	0.488
KRL06267.1	KRL07944.1	FC92_GL000947	FC92_GL001011	Iron ABC transporter substrate-binding protein.	Lysin.	0.510
KRL06268.1	KRL06265.1	FC92_GL000948	FC92_GL000945	Cell surface protein.	Iron-siderophore uptake ABC system ATP-binding component.	0.869
KRL06268.1	KRL06266.1	FC92_GL000948	FC92_GL000946	Cell surface protein.	Ferrichrome ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.922