STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL89164.1ABC superfamily ATP binding cassette transporter. (861 aa)    
Predicted Functional Partners:
KRL89106.1
Glycosyl transferase family 2.
 
  
 0.767
KRL89165.1
Penicillin-binding protein.
       0.747
KRL89031.1
Hypothetical protein.
  
     0.650
KRL89163.1
N-acetylglucosamine kinase.
       0.550
KRL91308.1
Brp Blh family beta-carotene 15,15-monooxygenase.
  
     0.456
rpmG
Hypothetical protein; Belongs to the bacterial ribosomal protein bL33 family.
       0.444
KRL90753.1
Sortase SrtA.
  
     0.442
KRL91365.1
GtrA family membrane protein.
  
  
 0.424
KRL90343.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Lactobacillus kalixensis
NCBI taxonomy Id: 1423763
Other names: L. kalixensis DSM 16043, Lactobacillus kalixensis DSM 16043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.