STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppA-2ABC transporter periplasmic protein. (599 aa)    
Predicted Functional Partners:
oppB
ABC transporter.
 
 0.989
KRM53408.1
Peptide ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.987
KRM53411.1
Oligopeptide dipeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.984
oppF
Nickel-transporting ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.979
oppA
ABC transporter periplasmic protein.
  
 
0.907
oppA-5
ABC transporter periplasmic protein.
  
  
 
0.902
oppB-2
ABC transporter.
  
 
 0.577
oppC
ABC transporter.
  
 
 0.479
KRM49389.1
Polar amino acid ABC transporter inner membrane subunit.
  
 
 0.446
KRM52222.1
Polar amino acid ABC transporter inner membrane subunit.
  
 
 0.446
Your Current Organism:
Lactobacillus kefiri
NCBI taxonomy Id: 1423764
Other names: L. kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri DSM 20587, Lactobacillus kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri JCM 5818
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