STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM49681.1ABC transporter periplasmic protein. (546 aa)    
Predicted Functional Partners:
oppB-2
ABC transporter.
 
 0.969
oppC
ABC transporter.
 
 0.966
oppD
Oligopeptide dipeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 0.953
oppF-2
Nickel-transporting ATPase.
 
 0.943
KRM49856.1
ABC transporter periplasmic protein.
  
  
 
0.491
KRM49389.1
Polar amino acid ABC transporter inner membrane subunit.
  
 
 0.421
KRM52222.1
Polar amino acid ABC transporter inner membrane subunit.
  
 
 0.421
oppA-3
ABC transporter periplasmic protein.
  
  
 
0.414
oppA-6
ABC transporter, substrate-binding protein, family 5.
  
  
 
0.414
oppA-7
ABC transporter, substrate-binding protein, family 5.
  
  
 
0.413
Your Current Organism:
Lactobacillus kefiri
NCBI taxonomy Id: 1423764
Other names: L. kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri DSM 20587, Lactobacillus kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri JCM 5818
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