STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM52588.1Integrase. (147 aa)    
Predicted Functional Partners:
KRM53680.1
Replication protein a.
 
     0.689
KRM53865.1
Phosphoribosyltransferase.
  
    0.517
tyrA
Prephenate dehydrogenase.
  
    0.500
KRM53830.1
Hypothetical protein.
 
     0.496
KRM49765.1
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
  
 0.480
whiA
Sporulation transcriptional regulator whiA; Involved in cell division and chromosome segregation.
   
    0.479
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.421
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.416
recJ
single-stranded-DNA-specific exonuclease RecJ.
  
  
 0.400
Your Current Organism:
Lactobacillus kefiri
NCBI taxonomy Id: 1423764
Other names: L. kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri DSM 20587, Lactobacillus kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri JCM 5818
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