STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM52456.1Periplasmic protease. (333 aa)    
Predicted Functional Partners:
KRM52455.1
Hypothetical protein.
 
     0.907
lytH
Cell wall hydrolase autolysin.
  
  
 0.764
KRM52848.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.625
KRM54018.1
N-acetylmuramoyl-L-alanine amidase family 2 protein.
 
  
 0.617
KRM52845.1
Lysozyme.
 
  
 0.614
KRM49825.1
N-acetylmuramoyl-L-alanine amidase family 2 protein.
 
  
 0.595
KRM53208.1
Hypothetical protein.
 
   
 0.557
KRM50411.1
Hypothetical protein.
  
     0.544
KRM50488.1
NLP P60 protein.
  
  
 0.528
KRM53016.1
Hypothetical protein.
  
    0.496
Your Current Organism:
Lactobacillus kefiri
NCBI taxonomy Id: 1423764
Other names: L. kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri DSM 20587, Lactobacillus kefiri DSM 20587 = JCM 5818, Lactobacillus kefiri JCM 5818
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.