STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL44584.1Nitroreductase (oxidoreductase); Belongs to the flavin oxidoreductase frp family. (245 aa)    
Predicted Functional Partners:
KRL46108.1
Bifunctional protein riboflavin kinase; Belongs to the ribF family.
    
 0.930
KRL43526.1
Hypothetical protein.
    
  0.922
KRL45313.1
HAD superfamily hydrolase.
    
  0.919
KRL45891.1
Hydrolase, had superfamily, cof family.
    
  0.903
KRL44307.1
Phosphatase YbjI.
    
  0.823
KRL44585.1
Recombination factor protein RarA.
       0.702
KRL43626.1
O-succinylbenzoic acid--CoA ligase.
   
   0.633
KRL42630.1
Acyl-CoA synthetase family protein.
   
   0.633
KRL42645.1
acyl-CoA synthetase family protein.
   
   0.633
KRL44354.1
NADH dehydrogenase.
     
 0.565
Your Current Organism:
Lactobacillus mindensis
NCBI taxonomy Id: 1423770
Other names: L. mindensis DSM 14500, Lactobacillus mindensis DSM 14500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.