KRM17286.1 protein (Lactobacillus nantensis)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

KRM17286.1

Phage recombination protein Bet. (284 aa)

Predicted Functional Partners:

KRM17285.1

0.890

KRM17287.1

0.705

KRM17268.1

0.687

KRM17281.1

0.541

KRM17288.1

0.522

KRM17289.1

0.522

KRM17290.1

0.522

KRM17291.1

0.522

KRM17271.1

0.466

KRM17272.1

0.408

Your Current Organism:

Lactobacillus nantensis

NCBI taxonomy Id: 1423774
Other names: L. nantensis DSM 16982, Lactobacillus nantensis DSM 16982

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRM17268.1	KRM17271.1	FD31_GL000347	FD31_GL000350	Phage-related minor capsid protein (gpg protein).	Prophage Lp1 protein 39.	0.872
KRM17268.1	KRM17272.1	FD31_GL000347	FD31_GL000351	Phage-related minor capsid protein (gpg protein).	Hypothetical protein.	0.800
KRM17268.1	KRM17281.1	FD31_GL000347	FD31_GL000360	Phage-related minor capsid protein (gpg protein).	Phage-related antirepressor.	0.463
KRM17268.1	KRM17286.1	FD31_GL000347	FD31_GL000365	Phage-related minor capsid protein (gpg protein).	Phage recombination protein Bet.	0.687
KRM17271.1	KRM17268.1	FD31_GL000350	FD31_GL000347	Prophage Lp1 protein 39.	Phage-related minor capsid protein (gpg protein).	0.872
KRM17271.1	KRM17272.1	FD31_GL000350	FD31_GL000351	Prophage Lp1 protein 39.	Hypothetical protein.	0.857
KRM17271.1	KRM17285.1	FD31_GL000350	FD31_GL000364	Prophage Lp1 protein 39.	Prophage lp1 protein 19.	0.453
KRM17271.1	KRM17286.1	FD31_GL000350	FD31_GL000365	Prophage Lp1 protein 39.	Phage recombination protein Bet.	0.466
KRM17272.1	KRM17268.1	FD31_GL000351	FD31_GL000347	Hypothetical protein.	Phage-related minor capsid protein (gpg protein).	0.800
KRM17272.1	KRM17271.1	FD31_GL000351	FD31_GL000350	Hypothetical protein.	Prophage Lp1 protein 39.	0.857
KRM17272.1	KRM17286.1	FD31_GL000351	FD31_GL000365	Hypothetical protein.	Phage recombination protein Bet.	0.408
KRM17281.1	KRM17268.1	FD31_GL000360	FD31_GL000347	Phage-related antirepressor.	Phage-related minor capsid protein (gpg protein).	0.463
KRM17281.1	KRM17285.1	FD31_GL000360	FD31_GL000364	Phage-related antirepressor.	Prophage lp1 protein 19.	0.606
KRM17281.1	KRM17286.1	FD31_GL000360	FD31_GL000365	Phage-related antirepressor.	Phage recombination protein Bet.	0.541
KRM17285.1	KRM17271.1	FD31_GL000364	FD31_GL000350	Prophage lp1 protein 19.	Prophage Lp1 protein 39.	0.453
KRM17285.1	KRM17281.1	FD31_GL000364	FD31_GL000360	Prophage lp1 protein 19.	Phage-related antirepressor.	0.606
KRM17285.1	KRM17286.1	FD31_GL000364	FD31_GL000365	Prophage lp1 protein 19.	Phage recombination protein Bet.	0.890
KRM17285.1	KRM17287.1	FD31_GL000364	FD31_GL000366	Prophage lp1 protein 19.	Hypothetical protein.	0.504
KRM17286.1	KRM17268.1	FD31_GL000365	FD31_GL000347	Phage recombination protein Bet.	Phage-related minor capsid protein (gpg protein).	0.687
KRM17286.1	KRM17271.1	FD31_GL000365	FD31_GL000350	Phage recombination protein Bet.	Prophage Lp1 protein 39.	0.466

page 1 of 3

Network Stats

number of nodes:

3

number of edges:

2

average node degree:

1.33

avg. local clustering coefficient:

0.667

expected number of edges:

2

PPI enrichment p-value:

0.528

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0031419

Cobalamin binding

5 of 13

2.03

2.83

9.75e-07

GO:0016866

Intramolecular transferase activity

5 of 19

1.86

2.51

2.40e-06

GO:0046872

Metal ion binding

7 of 491

0.6

0.36

0.0419

GO:0036094

Small molecule binding

7 of 512

0.58

0.35

0.0424

GO:0043167

Ion binding

9 of 859

0.46

0.31

0.0327

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2194

Cobalamin binding, and Glyoxalase-like domain

7 of 12

2.21

4.9

2.12e-11

CL:2196

Mixed, incl. Methylmalonyl-CoA mutase, and Glyoxalase-like domain

3 of 6

2.14

1.66

0.00062

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00280

Valine, leucine and isoleucine degradation

8 of 33

1.83

4.01

8.96e-12

map00640

Propanoate metabolism

7 of 36

1.73

3.24

1.14e-09

map00630

Glyoxylate and dicarboxylate metabolism

7 of 54

1.56

2.58

1.01e-08

map01200

Carbon metabolism

7 of 147

1.12

1.28

5.53e-06

map01120

Microbial metabolism in diverse environments

7 of 399

0.69

0.52

0.0031

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF02310

B12 binding domain

4 of 8

2.14

2.36

2.00e-05

PF13468

Glyoxalase-like domain

2 of 3

2.27

0.85

0.0267

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036724

Cobalamin-binding domain superfamily

4 of 7

2.2

2.27

3.61e-05

IPR006158

Cobalamin (vitamin B12)-binding domain

4 of 7

2.2

2.27

3.61e-05

IPR006159

Methylmalonyl-CoA mutase, C-terminal

3 of 3

2.44

1.9

0.00028

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