KRM15062.1 protein (Lactobacillus nantensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRM15062.1

Major facilitator superfamily permease. (405 aa)

Predicted Functional Partners:

KRM15063.1

0.821

KRM15818.1

0.716

KRM16811.1

0.646

KRM15059.1

0.627

KRM15061.1

0.592

fucI

0.570

KRM15064.1

0.556

KRM15509.1

0.488

KRM15065.1

0.462

KRM15066.1

0.448

Your Current Organism:

Lactobacillus nantensis

NCBI taxonomy Id: 1423774
Other names: L. nantensis DSM 16982, Lactobacillus nantensis DSM 16982

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRM15059.1	KRM15061.1	FD31_GL001395	FD31_GL001397	Carbohydrate kinase FGGY.	Hypothetical protein.	0.941
KRM15059.1	KRM15062.1	FD31_GL001395	FD31_GL001398	Carbohydrate kinase FGGY.	Major facilitator superfamily permease.	0.627
KRM15059.1	KRM15063.1	FD31_GL001395	FD31_GL001399	Carbohydrate kinase FGGY.	Alpha-L-fucosidase.	0.772
KRM15059.1	fucI	FD31_GL001395	FD31_GL001396	Carbohydrate kinase FGGY.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.982
KRM15061.1	KRM15059.1	FD31_GL001397	FD31_GL001395	Hypothetical protein.	Carbohydrate kinase FGGY.	0.941
KRM15061.1	KRM15062.1	FD31_GL001397	FD31_GL001398	Hypothetical protein.	Major facilitator superfamily permease.	0.592
KRM15061.1	KRM15063.1	FD31_GL001397	FD31_GL001399	Hypothetical protein.	Alpha-L-fucosidase.	0.520
KRM15061.1	KRM15066.1	FD31_GL001397	FD31_GL001402	Hypothetical protein.	Hypothetical protein.	0.535
KRM15061.1	fucI	FD31_GL001397	FD31_GL001396	Hypothetical protein.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.926
KRM15062.1	KRM15059.1	FD31_GL001398	FD31_GL001395	Major facilitator superfamily permease.	Carbohydrate kinase FGGY.	0.627
KRM15062.1	KRM15061.1	FD31_GL001398	FD31_GL001397	Major facilitator superfamily permease.	Hypothetical protein.	0.592
KRM15062.1	KRM15063.1	FD31_GL001398	FD31_GL001399	Major facilitator superfamily permease.	Alpha-L-fucosidase.	0.821
KRM15062.1	KRM15064.1	FD31_GL001398	FD31_GL001400	Major facilitator superfamily permease.	asnA2 protein.	0.556
KRM15062.1	KRM15065.1	FD31_GL001398	FD31_GL001401	Major facilitator superfamily permease.	Hypothetical protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.	0.462
KRM15062.1	KRM15066.1	FD31_GL001398	FD31_GL001402	Major facilitator superfamily permease.	Hypothetical protein.	0.448
KRM15062.1	KRM15509.1	FD31_GL001398	FD31_GL001225	Major facilitator superfamily permease.	Hypothetical protein.	0.488
KRM15062.1	KRM15818.1	FD31_GL001398	FD31_GL000918	Major facilitator superfamily permease.	Sppe.	0.716
KRM15062.1	KRM16811.1	FD31_GL001398	FD31_GL000484	Major facilitator superfamily permease.	Hypothetical protein.	0.646
KRM15062.1	fucI	FD31_GL001398	FD31_GL001396	Major facilitator superfamily permease.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.570
KRM15063.1	KRM15059.1	FD31_GL001399	FD31_GL001395	Alpha-L-fucosidase.	Carbohydrate kinase FGGY.	0.772