STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM18155.1Drug Na(+) antiporter (drug efflux pump). (497 aa)    
Predicted Functional Partners:
KRM18154.1
Hypothetical protein.
  
    0.928
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.751
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.707
KRM14462.1
Rod shape-determining protein MreD.
 
    0.637
KRM14463.1
Septum site-determining protein; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization.
 
    0.618
KRM14461.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
    0.543
KRM14993.1
Glycolyticproteinregulator.
  
    0.480
KRM18561.1
ATP-dependent helicase deoxyribonuclease subunit B; ATP-dependent DNA helicase.
  
     0.476
KRM16058.1
Hypothetical protein.
 
     0.474
KRM18606.1
N-acetylmuramoyl-L-alanine amidase.
  
   
 0.465
Your Current Organism:
Lactobacillus nantensis
NCBI taxonomy Id: 1423774
Other names: L. nantensis DSM 16982, Lactobacillus nantensis DSM 16982
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.