STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK81251.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
KRK81249.1
Conjugative transposon protein.
 
   0.958
KRK81252.1
Conjugative transposon protein.
 
    0.951
KRK81253.1
Hypothetical protein.
 
     0.916
KRK81255.1
Hypothetical protein.
 
    0.909
KRK81256.1
Hypothetical protein.
 
    0.904
KRK81254.1
Conjugative transposon membrane protein.
 
    0.896
KRK81262.1
Hypothetical protein.
 
  
 0.855
KRK81260.1
Conjugative transposon FtsK SpoIIIE family protein.
 
    0.810
KRK81263.1
Hypothetical protein.
 
     0.808
KRK81258.1
Transcriptional regulator.
 
     0.806
Your Current Organism:
Lactobacillus nodensis
NCBI taxonomy Id: 1423775
Other names: L. nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis DSM 19682, Lactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis JCM 14932, Lactobacillus nodensis NBRC 107160
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.