Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRK79338.1 | KRK79842.1 | FD03_GL001704 | FD03_GL000544 | Competence damage-inducible protein A; Belongs to the CinA family. | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | 0.447 |
| KRK79338.1 | lexA | FD03_GL001704 | FD03_GL000177 | Competence damage-inducible protein A; Belongs to the CinA family. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.585 |
| KRK79338.1 | mutL | FD03_GL001704 | FD03_GL000537 | Competence damage-inducible protein A; Belongs to the CinA family. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.685 |
| KRK79338.1 | polA | FD03_GL001704 | FD03_GL000096 | Competence damage-inducible protein A; Belongs to the CinA family. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.708 |
| KRK79338.1 | recA | FD03_GL001704 | FD03_GL001705 | Competence damage-inducible protein A; Belongs to the CinA family. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.896 |
| KRK79338.1 | recX | FD03_GL001704 | FD03_GL001607 | Competence damage-inducible protein A; Belongs to the CinA family. | Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family. | 0.725 |
| KRK79842.1 | KRK79338.1 | FD03_GL000544 | FD03_GL001704 | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | Competence damage-inducible protein A; Belongs to the CinA family. | 0.447 |
| KRK79842.1 | KRK81054.1 | FD03_GL000544 | FD03_GL001191 | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.835 |
| KRK79842.1 | lexA | FD03_GL000544 | FD03_GL000177 | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.888 |
| KRK79842.1 | mutL | FD03_GL000544 | FD03_GL000537 | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.400 |
| KRK79842.1 | polA | FD03_GL000544 | FD03_GL000096 | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.749 |
| KRK79842.1 | recA | FD03_GL000544 | FD03_GL001705 | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.885 |
| KRK79842.1 | topA | FD03_GL000544 | FD03_GL001982 | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.554 |
| KRK80530.1 | KRK81054.1 | FD03_GL001954 | FD03_GL001191 | ATP-dependent DNA helicase RecQ. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.823 |
| KRK80530.1 | mutL | FD03_GL001954 | FD03_GL000537 | ATP-dependent DNA helicase RecQ. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.825 |
| KRK80530.1 | polA | FD03_GL001954 | FD03_GL000096 | ATP-dependent DNA helicase RecQ. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.973 |
| KRK80530.1 | recA | FD03_GL001954 | FD03_GL001705 | ATP-dependent DNA helicase RecQ. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.903 |
| KRK80530.1 | rpoB | FD03_GL001954 | FD03_GL000367 | ATP-dependent DNA helicase RecQ. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.476 |
| KRK80530.1 | topA | FD03_GL001954 | FD03_GL001982 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.999 |
| KRK81054.1 | KRK79842.1 | FD03_GL001191 | FD03_GL000544 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA-damage-inducible protein P; Belongs to the DNA polymerase type-Y family. | 0.835 |
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