STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK79344.1COMF operon protein 3. (226 aa)    
Predicted Functional Partners:
KRK79343.1
ComF operon protein 1.
 
  
 0.962
KRK80667.1
Type II secretion competence system, protein ComEC-like.
  
  
 0.773
hpf
30S ribosomal interface protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.729
KRK79342.1
Hypothetical protein.
  
    0.717
KRK80668.1
Competence protein CelA.
 
  
 0.711
KRK80559.1
DNA processing protein.
  
 
 0.691
KRK80312.1
ComG operon protein 2.
 
  
 0.675
KRK80719.1
Hypothetical protein; Belongs to the UPF0758 family.
  
    0.650
KRK79324.1
Prephenate dehydrogenase.
   
  
 0.573
KRK80313.1
Hypothetical protein.
  
  
 0.534
Your Current Organism:
Lactobacillus nodensis
NCBI taxonomy Id: 1423775
Other names: L. nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis DSM 19682, Lactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis JCM 14932, Lactobacillus nodensis NBRC 107160
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