STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK80396.1Citrate lyase regulator. (313 aa)    
Predicted Functional Partners:
citD
Hypothetical protein; Covalent carrier of the coenzyme of citrate lyase.
 
 
  0.882
KRK80401.1
Citrate lyase, alpha chain.
 
 
  0.864
KRK80400.1
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.835
KRK80398.1
[citrate (pro-3s)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
    0.789
citG
CitXG protein.
 
     0.777
KRK80403.1
Hydrolase acyltransferase.
 
     0.669
KRK80397.1
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)).
 
    0.632
KRK79387.1
Alpha beta superfamily hydrolase.
  
     0.427
KRK80620.1
phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase).
 
     0.414
Your Current Organism:
Lactobacillus nodensis
NCBI taxonomy Id: 1423775
Other names: L. nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis DSM 19682, Lactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis JCM 14932, Lactobacillus nodensis NBRC 107160
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