STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK80274.1Hypothetical protein. (135 aa)    
Predicted Functional Partners:
KRK80095.1
Hypothetical protein.
 
     0.623
KRK79338.1
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.590
KRK78823.1
Hypothetical protein.
  
     0.574
KRK80101.1
Hypothetical protein.
 
     0.540
KRK80273.1
Hypothetical protein.
       0.520
KRK80216.1
Prophage terminase small subunit.
  
     0.491
KRK80100.1
Prophage lp1 protein 19.
  
     0.465
KRK80275.1
Hypothetical protein.
       0.439
KRK79175.1
Hypothetical protein.
 
     0.433
KRK80271.1
Hypothetical protein.
       0.420
Your Current Organism:
Lactobacillus nodensis
NCBI taxonomy Id: 1423775
Other names: L. nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis DSM 19682, Lactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160, Lactobacillus nodensis JCM 14932, Lactobacillus nodensis NBRC 107160
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.