STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK98459.1ABC superfamily ATP binding cassette transporter, ABC protein. (230 aa)    
Predicted Functional Partners:
KRK98460.1
ABC superfamily ATP binding cassette transporter, membrane protein.
 
  0.984
KRK98754.1
ABC transporter permease.
 
 0.892
KRK98490.1
Antimicrobial peptide ABC transporter permease.
  
  0.749
KRK98536.1
Peptide ABC transporter ATPase.
 
 
0.746
KRK99681.1
ABC transporter related protein.
 
 
0.742
KRK97086.1
ABC superfamily ATP binding cassette transporter, membrane protein.
   
  0.708
KRK97404.1
Glutamate ABC superfamily ATP binding cassette transporter, membrane protein.
 
 
 0.667
KRK97460.1
Abc-type amino acid transport system, permease component.
 
 
 
  0.581
KRK98228.1
Polar amino acid ABC transporter inner membrane subunit.
 
 
 0.567
KRK97852.1
Polysaccharide deacetylase.
   
 
 0.486
Your Current Organism:
Lactobacillus odoratitofui
NCBI taxonomy Id: 1423776
Other names: L. odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui DSM 19909, Lactobacillus odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui JCM 15043, Lactobacillus odoratitofui JCM 15043 = DSM 19909, Lactobacillus sp. YIT 11304
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