STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK97881.1Cell surface protein. (432 aa)    
Predicted Functional Partners:
KRK97882.1
Cell surface protein.
 
   
 0.933
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
  0.923
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.877
KRK97883.1
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
    0.851
KRK99836.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.749
KRK98806.1
Transcriptional regulator.
  
     0.742
KRK98762.1
Hypothetical protein.
  
     0.737
KRK97885.1
Iron-chelate-transporting ATPase.
 
     0.734
KRK96988.1
Hypothetical protein.
  
     0.724
KRK98673.1
S-layer protein.
  
     0.722
Your Current Organism:
Lactobacillus odoratitofui
NCBI taxonomy Id: 1423776
Other names: L. odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui DSM 19909, Lactobacillus odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui JCM 15043, Lactobacillus odoratitofui JCM 15043 = DSM 19909, Lactobacillus sp. YIT 11304
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