STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK97955.1Hypothetical protein. (57 aa)    
Predicted Functional Partners:
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.698
KRK97959.1
Hypothetical protein.
 
     0.510
KRK98210.1
Hypothetical protein.
   
    0.509
KRK97957.1
Glutamine synthetase repressor.
       0.493
KRK99467.1
Hypothetical protein.
  
     0.489
KRK98115.1
LysM domain protein.
  
     0.457
KRK97961.1
Hypothetical protein.
 
     0.453
KRK97965.1
Hypothetical protein; Belongs to the UPF0145 family.
   
    0.452
KRK97245.1
Thiol-disulfide isomerase and thioredoxin; Belongs to the thioredoxin family.
   
    0.452
KRK97958.1
Glutamine synthetase.
       0.437
Your Current Organism:
Lactobacillus odoratitofui
NCBI taxonomy Id: 1423776
Other names: L. odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui DSM 19909, Lactobacillus odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui JCM 15043, Lactobacillus odoratitofui JCM 15043 = DSM 19909, Lactobacillus sp. YIT 11304
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