Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KRK97109.1 | KRK97137.1 | FD04_GL001969 | FD04_GL001997 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
| KRK97109.1 | rnc | FD04_GL001969 | FD04_GL000989 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.963 |
| KRK97109.1 | rplM | FD04_GL001969 | FD04_GL001996 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| KRK97109.1 | rplQ | FD04_GL001969 | FD04_GL001990 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Ribosomal protein L17. | 0.997 |
| KRK97109.1 | rplS | FD04_GL001969 | FD04_GL001001 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
| KRK97109.1 | rpmA | FD04_GL001969 | FD04_GL000959 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.995 |
| KRK97109.1 | rpsF | FD04_GL001969 | FD04_GL002410 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.996 |
| KRK97109.1 | rpsL | FD04_GL001969 | FD04_GL001960 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.997 |
| KRK97109.1 | rpsO | FD04_GL001969 | FD04_GL001220 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | rpsO protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.996 |
| KRK97109.1 | rpsP | FD04_GL001969 | FD04_GL000997 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.996 |
| KRK97137.1 | KRK97109.1 | FD04_GL001997 | FD04_GL001969 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.997 |
| KRK97137.1 | rnc | FD04_GL001997 | FD04_GL000989 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.968 |
| KRK97137.1 | rplM | FD04_GL001997 | FD04_GL001996 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| KRK97137.1 | rplQ | FD04_GL001997 | FD04_GL001990 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Ribosomal protein L17. | 0.998 |
| KRK97137.1 | rplS | FD04_GL001997 | FD04_GL001001 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.997 |
| KRK97137.1 | rpmA | FD04_GL001997 | FD04_GL000959 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.997 |
| KRK97137.1 | rpsF | FD04_GL001997 | FD04_GL002410 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| KRK97137.1 | rpsL | FD04_GL001997 | FD04_GL001960 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
| KRK97137.1 | rpsO | FD04_GL001997 | FD04_GL001220 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | rpsO protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
| KRK97137.1 | rpsP | FD04_GL001997 | FD04_GL000997 | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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