STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK98177.1Hypothetical protein. (77 aa)    
Predicted Functional Partners:
KRK98645.1
Hypothetical protein.
  
     0.770
KRK98820.1
XRE family transcriptional regulator.
  
     0.768
KRK98646.1
Branched-chain amino acid permease (azaleucine resistance).
  
     0.761
KRK98821.1
Hypothetical protein.
  
     0.745
KRK98804.1
Hypothetical protein.
  
     0.710
KRK99200.1
Hypothetical protein.
  
     0.694
KRK98287.1
Hypothetical protein.
  
     0.688
KRK98198.1
Hypothetical protein.
  
     0.669
KRK99803.1
Hypothetical protein.
  
     0.649
KRK99412.1
Rod shape-determining protein MreD.
  
     0.638
Your Current Organism:
Lactobacillus odoratitofui
NCBI taxonomy Id: 1423776
Other names: L. odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui DSM 19909, Lactobacillus odoratitofui DSM 19909 = JCM 15043, Lactobacillus odoratitofui JCM 15043, Lactobacillus odoratitofui JCM 15043 = DSM 19909, Lactobacillus sp. YIT 11304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.